Immune mediators of cytomegalovirus latency

Fig. 1: Interferon protects cells to be infected with MCMV..

A reporter cell line was treated with Interferon beta. In this cell population not all cells respond to Interferon (red gene expression in Interferon responding cells). The cells were infected with mouse cytomegalovirus (MCMV). The viral gene expression (green gene expression) is visible in the non-responding cells.

The well-known adage “Herpes is forever” describes the lack of therapeutic options to conclusively cure a herpes infection.  Once a herpesvirus has entered the host’s body, it stays for life, hiding in host cells in a dormant state called latency, from which it may reactivate and cause disease if the host immunity becomes impaired. Cytomegalovirus (CMV) is a member of the family of herpesviruses that causes mild or no disease in healthy individuals, but may lead to life-threatening disease upon infection or reactivation of immunocompromised hosts. This is particularly dangerous and common in bone-marrow or solid-organ transplanted people. In contrast to most other herpesviruses, CMV infects numerous cell types, including endothelial cells and bone marrow-derived cells, and therefore may cause major damage in many different organs.

Upon initial infection, the immune system typically does its job and contains the virus. It is actually quite successful in the case of CMV, since the disease course is mild or entirely absent. The virus in turn is also successful from a biological standpoint, because it establishes latency and resides in host cells for life. In the project B2, we aim to understand the initial immune reactions to CMV and their effect on latency. Type I Interferons are secreted immediately upon infection and inhibit viral growth very effectively. The role of type I Interferons during CMV latency and reactivation is less clear. In addition, the cell types that serve as sites of CMV latency are also unclear. Our study of the complex interplay between the immune system and the virus is based on virogical, cell-biology and molecular-biology methods and aims to understand the mechanism of virus silencing by the immune system at the very molecular level.

Scientific work programme

While it is well-accepted that type I Interferon plays a major role during the primary viral infection, its contribution to the establishment of latency and reactivation is unknown. In particular, the effector mechanisms downstream of the IFN receptor are poorly described and understood. Furthermore, the research of CMV latency has been restricted to bone-marrow derived cells.
We showed previously that type I Interferons may play a role in inducing the latent state in vitro and in vivo. We have developed a cell line in which we could monitor the response to interferon via fluorescent gene expression and observed that some cells fail to respond even when high concentrations are used (Rand et al, 2012). Since it was shown that CMV establishes latency in liver endothelial cells, we generated a line of endothelial cells isolated from the mouse liver (Dag et al., 2013) and showed that Interferon beta is sufficient the silencing of for CMV gene expression, but does not eradicate the virus from the cells. Namely, viral gene expression restarted once Interferon was retracted from the medium (Dag et al., 2014).

We also showed that the latency of MHV68, a murine gamma herpesvirus and an analogue of the human pathogens Kaposi Sarcoma Herpesvirus and Epstein Barr Virus, can be controlled by type I Interferons in vivo (Schwerk et al, manuscript in preparation).

The mechanisms that links type I Interferons to CMV latency will be described in this project. By means of Cas9 technology, we are generating several knockout cell lines lacking interferon-inducible genes that are potential effectors of the IFN action. This approach allows us to expand our efforts to human cells and directly work on the clinically relevant human CMV. Additionally, we will infect different mouse strains that lack the Interferon type I receptor in different cell types, and define the cell types affected by IFN in CMV latency in the in vivo model.

Fig 2: MCMV cannot replicate in Interferon-responding cells. .

The reporter cell line was pre-treated with Interferon beta and the Interferon-responding cells were isolated by means of the red fluorescent gene expression and subsequently infected with MCMV (responder, white circles). Simultaneously, the non-responding cells were infected (non-responders, black circles). After 2, 4 and 6 days cell supernatants were collected and titrated on other cells to determine the Plaque Forming Unit (PFU). Replicating virus could only be detected in non-responding cells.

Fig 3: Interferon retraction allows MCMV to restart its gene expression.

Liver endothelial cells were pre-treated with Interferon beta and subsequently infected with MCMV. Viral gene expression (green) is visible if cells are not treated with Interferon beta (left picture). MCMV-infected cells were treated with Interferon for 7 days. After 7 days post infection, cells were cultivated in medium not containing Interferon beta anymore and viral gene expression was checked up to 12 days post Interferon retraction (+/- IFNb, grey line). Control cells were infected and treated for the whole duration of the experiment with Interferon beta (+ IFNb, black line). 7 days post IFN retraction, viral gene expression was detected again.

Fig 4: Interferon is induced after MHV68 reactivates in vivo.

Mx2Luc reporter mice were latently infected with MHV68 and splenocytes were isolated from these mice. These cells were transferred into wildtype (WT) or IFN type I receptor knockout (IFNAR-/-). After 7 days post transfer, whole-body in vivo imaging was performed to detect the activity of the luc-reporter that corresponds to IFN activity in the transferred splenocytes.

Luka Cicin-Sain and Ulrich Kalinke are talking about their research at CRC 900

The Project B2 was headed by Luca Cicin-Sain and Hansjörg Hauser since the founding of the CRC in 2010. Since juli 2018 Ulrich Kalinke and Luca Cicin-Sain teamed up in the project B2. They analyse the question of how the body’s own interferons influence latent herpesvirus infections, mainly using cytomegalovirus infections.

Publications of the project B2

  • Single-cell transcriptional profiling of splenic fibroblasts reveals subset-specific innate immune signatures in homeostasis and during viral infection. Pezoldt J, Wiechers C, Erhard F, Rand U, Bulat T, Beckstette M, Brendolan A, Huehn J, Kalinke U, Mueller M, Strobl B, Deplancke B, Čičin-Šain L, Sitnik KM. Communications Biology 2021 December 02volume 4, Article number: 1355
  • Fucosylated lipid nanocarriers loaded with antibiotics efficiently inhibit mycobacterial propagation in human myeloid cells. Durán V, Grabski E, Hozsa C, Becker J, Yasar H, Monteiro JT, Costa B, Koller N, Lueder Y, Wiegmann B, Brandes G, Kaever V, Lehr C-M, Lepenies B, Tampé R, Förster R, Bosnjak B, Furch M, Graalmann T, Kalinke U. J Control Release 2021 ; 334
  • Sequential MAVS and MyD88/TRIF signaling triggers anti-viral responses of tick-borne encephalitis virus-infected murine astrocytes. Ghita L, Breitkopf V, Mulenge F, Pavlou A, Gern OL, Durán V, Prajeeth C, Kandiyil K, Kohls M, Jung K, Stangel M, Steffen I, Kalinke U. J Neurosci Res 2021; 99; 10
  • B cell depletion impairs vaccination-induced CD8+ T cell responses in a type I interferon-dependent manner. Graalmann T, Borst K, Manchanda H, Vaas L, Bruhn M, Graalmann L, Koster M, Verboom M, Hallensleben M, Guzman CA, Sutter G, Schmidt RE, Witte T, Kalinke U. Ann Rheum Dis 2021; 80; 12
  • MyD88 signaling by neurons induces chemokines that recruit protective leukocytes to the virus-infected CNS. Ghita L, Spanier J,Chhatbar C, Mulenge F, Pavlou A, Larsen P-K, Waltl I, Lueder Y, Kohls M, Jung K, Best SM, Förster R, Stangel M, Schreiner D, Kalinke U. Sci. Immunol. 6, 2021 Jun 25, eabc9165
  • Synthetic rewiring and boosting type I interferon responses for visualization and counteracting viral infections. Gödecke N, Riedel J, Herrmann S, Behme S, Rand U, Kubsch T, Cicin-Sain L, Hauser H, Köster M, Wirth D. Nucleic Acids Res. 2020 Nov 18 48(20):11799-11811.
  • Cytomegalovirus memory inflation and immune protection. Cicin-Sain, L. Med Microbiol Immunol 2019 April 10208, 339–347
  • STING induces early IFN-β in the liver and constrains myeloid cell-mediated dissemination of murine cytomegalovirus. Tegtmeyer PK, Spanier J, Borst K, Becker J, Riedl A, Hirche C, Ghita L, Skerra J, Baumann K, Lienenklaus S, Doering M, Ruzsics Z, Kalinke U. Nat Commun. 2019 Jun 27;10(1):2830.
  • The deubiquitinase OTUB1 augments NF-κB-dependent immune responses in dendritic cells in infection and inflammation by stabilizing UBC13. Mulas F, Wang X, Song S, Nishanth G, Yi W, Brunn A, Larsen PK, Isermann B, Kalinke U, Barragan A, Naumann M, Deckert M, Schlüter D. Cell. Mol. Immunol.2020 February 05
  • Myeloid dendritic cells repress human cytomegalovirus gene expression and spread by releasing interferon-unrelated soluble antiviral factors. Kasmapour B, Kubsch T, Rand U, Eiz-Vesper B, Messerle M, Vondran FWR, Wiegmann B, Haverich A, Cicin-Sain L. J Virol. 2017 Dec 14;92(1).
  • Cell Polarization and Epigenetic Status Shape the Heterogeneous Response to Type III Interferons in Intestinal Epithelial Cells. Bhushal S, Wolfsmüller M, Selvakumar T, Kemper L, Wirth D, Hornef MW, Hauser H, Köster M. Front Immunol. 2017 Jun 12;8:671.

  • Proliferation status defines functional properties of endothelial cells. Lipps C, Badar M, Butueva M, Dubich T, Singh VV, Rau S, Weber A, Kracht M, Köster M, May T, Schulz TF, Hauser H, Wirth D. Cell Mol Life Sci. 2016 Nov 16.

  • Type I Interferon Released by Myeloid Dendritic Cells Reversibly Impairs Cytomegalovirus Replication by Inhibiting Immediate Early Gene Expression. Holzki JK, Dağ F, Dekhtiarenko I, Rand U, Casalegno-Garduño R, Trittel S, May T, Riese P, Čičin-Šain L. J Virol. 2015 Oct;89(19):9886-95. .

  • Single-cell analysis reveals heterogeneity in onset of transgene expression from synthetic tetracycline-dependent promoters. Rand U, Riedel J, Hillebrand U, Shin D, Willenberg S, Behme S, Klawonn F, Köster M, Hauser H, Wirth D. Biotechnol J. 2015 Feb;10(2):323-31.

  • Uncoupling of the dynamics of host-pathogen interaction uncovers new mechanisms of viral interferon antagonism at the single-cell level. Rand U, Hillebrand U, Sievers S, Willenberg S, Köster M, Hauser H, Wirth D. Nucleic Acids Res. 2014 Jul;42(13):e109.

  • Interferon regulatory factor-1 protects from fatal neurotropic infection with vesicular stomatitis virus by specific inhibition of viral replication in neurons. Nair S, Michaelsen-Preusse K, Finsterbusch K, Stegemann-Koniszewski S, Bruder D, Grashoff M, Korte M, Köster M, Kalinke U, Hauser H, Kröger A. PLoS Pathog. 2014 Mar 27;10(3):e1003999.

  • Reversible silencing of cytomegalovirus genomes by type I interferon governs virus latency. Dağ F, Dölken L, Holzki J, Drabig A, Weingärtner A, Schwerk J, Lienenklaus S, Conte I, Geffers R, Davenport C, Rand U, Köster M, Weiß S, Adler B, Wirth D, Messerle M, Hauser H, Cičin-Šain L. PLoS Pathog. 2014 Feb 20;10(2):e1003962.

  • Bridging the species divide: transgenic mice humanized for type-I interferon response. Harari D, Abramovich R, Zozulya A, Smith P, Pouly S, Köster M, Hauser H, Schreiber G. PLoS One. 2014 Jan 9;9(1):e84259.

  • Generation of mouse small intestinal epithelial cell lines that allow the analysis of specific innate immune functions. Schwerk J, Köster M, Hauser H, Rohde M, Fulde M, Hornef MW, May T. PLoS One. 2013 Aug 5;8(8):e72700.

  • A new reporter mouse cytomegalovirus reveals maintained immediate-early gene expression but poor virus replication in cycling liver sinusoidal endothelial cells. Dag F, Weingärtner A, Butueva M, Conte I, Holzki J, May T, Adler B, Wirth D, Cicin-Sain L. Virol J. 2013 Jun 17;10:197.

  • Multi-layered stochasticity and paracrine signal propagation shape the type-I interferon response. Rand U, Rinas M, Schwerk J, Nöhren G, Linnes M, Kröger A, Flossdorf M, Kály-Kullai K, Hauser H, Höfer T, Köster M. Mol Syst Biol. 2012 May 22;8:584.


Prof. Luka Cicin-Sain

Helmholtz Centre for Infection Research (HZI)
Immune aging and chronic infections
Inhoffenstr. 7
38124 Braunschweig

  +49 531 6181-4616

 Homepage of Luka Cicin-Sain´s working group

Prof. Dr. Ulrich Kalinke

Institut für Experimentelle Infektionsforschung
Zentrum für Experimentelle und Klinische Infektionsforschung (Twincore)
Feodor-Lynen-Str. 7
30625 Hannover

  +49 511-220027-112

Homepage of Ulrich Kalinke´s working group